Intra-cellular traffic and sorting of proteins Q6-Q10

Q-6. Following organelles are involved in the formation N-glycosylated product
a) Golgi apparatus
b) Nucleolus
c) SER
d) RER
e) Peroxisome

Answer: a and d
Explanation:
Organelles involved in the formation N-glycosylated product:
RER (Synthesis)
Golgi apparatus (Final processing)
Important points:
N-glycan chains if present are added as these proteins transverse the inner part of the ER membrane- a process called co-translational glycosylation.
Subsequently the proteins are found in the lumen of Golgi Apparatus where the further changes in glycan chains occur.

Q-7. Refsum’s disease is due to deficiency of which of the following enzyme?
a) Malonate dehydrogenase
b) Thiophorase
c) Succinate thiokinase
d) Phytanic alfa oxidase

Answer: Phytanic alfa oxidase
Explanation:
Refsum disease (RD) is a neuro-cutaneous syndrome that is characterized biochemically by the accumulation of phytanic acid in plasma and tissues.
Patients with Refsum disease are unable to degrade phytanic acid because of a deficient activity of phytanoyl-CoA hydroxylase, a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation.

Q-8. Proteins targeted for destruction in eukaryotes are covalently linked to
a) Clathrin
b) Pepsin
c) Laminin
d) Ubiquitin

Answer: Ubiquitin
Explanation:
Proteins that are defective or destined for rapid turnover are often marked for destruction by ubiquitination- the attachment of small, highly conserved protein, called Ubiquitin.
Proteins marked in this way are rapidly degraded by a cellular component known as the proteasome, which is complex, ATP-dependent, proteolytic system located in cytosol.
Important points:
Chaperone associate with nascent protein and ensures final proper conformation of the nascent protein
Signal peptide guides the trans-membrane proteins into endoplasmic reticulum.
Ubiquitin marks aged and abnormal proteins for degradation
Lysosomal protease doesn’t require ATP.

  1. Which of the following groups of proteins assist in the folding of other proteins?
    a) Proteases
    b) Proteosomes
    c) Templates
    d) Chaperones

Answer: Chaperones
Explanation:
Chaperons are proteins that prevent faulty folding and un-productive interactions of other proteins.
Many chaperones are heat shock proteins, that is, proteins expressed in response to elevated temperatures or other cellular stresses.
Human chaperone proteins:
General chaperones: GRP78/BiP
Lectin chaperones: Calnexin and Calreticulin
Non-classical molecular chaperones: HSP47 and ERp29
Folding chaperones:
Protein disulfide isomerase (PDI)
Peptidyl prolyl cis-trans-isomerase (PPI)
ERp57

Q-10. The ligand-receptor complex dissociates in the endosome because
a) Of its large size
b) The vesicle loses its clathrin coat
c) Of the acidic pH of the vesicle
d) Of the basic pH of the vesicle

Answer: Of the acidic pH of the vesicle
Explanation:
Endocytosed cell-surface receptors dissociate from their ligands within late endosomes.
The acidic pH of late endosomes causes most receptors and ligands to dissociate.